CerebralWeb: A cytoscape.js plug-in to visualize networks stratified by subcellular localization

Silvia Frias; Kenneth Bryan; Fiona S L Brinkman; David J. Lynn

doi:10.1093/database/bav041

CerebralWeb: A cytoscape.js plug-in to visualize networks stratified by subcellular localization

Silvia Frias, Kenneth Bryan, Fiona S L Brinkman, David J. Lynn

Computational And Systems Biology

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

Abstract

CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb. com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources.

Original language	English
Article number	bav041
Journal	Database
Volume	2015
DOIs	https://doi.org/10.1093/database/bav041
Publication status	Published or Issued - 2015

ASJC Scopus subject areas

Information Systems
Biochemistry, Genetics and Molecular Biology(all)
Agricultural and Biological Sciences(all)

Access to Document

10.1093/database/bav041

Cite this

@article{b253b53de96d48b7bcdf0f195fb1b1d6,

title = "CerebralWeb: A cytoscape.js plug-in to visualize networks stratified by subcellular localization",

abstract = "CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb. com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources.",

author = "Silvia Frias and Kenneth Bryan and Brinkman, {Fiona S L} and Lynn, {David J.}",

note = "Publisher Copyright: {\textcopyright} The Author(s) 2015. Published by Oxford University Press.",

year = "2015",

doi = "10.1093/database/bav041",

language = "English",

volume = "2015",

journal = "Database",

issn = "1758-0463",

publisher = "Oxford University Press",

}

TY - JOUR

T1 - CerebralWeb

T2 - A cytoscape.js plug-in to visualize networks stratified by subcellular localization

AU - Frias, Silvia

AU - Bryan, Kenneth

AU - Brinkman, Fiona S L

AU - Lynn, David J.

PY - 2015

Y1 - 2015

N2 - CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb. com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources.

AB - CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb. com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources.

UR - http://www.scopus.com/inward/record.url?scp=84943186614&partnerID=8YFLogxK

U2 - 10.1093/database/bav041

DO - 10.1093/database/bav041

M3 - Article

C2 - 25953080

AN - SCOPUS:84943186614

SN - 1758-0463

VL - 2015

JO - Database

JF - Database

M1 - bav041

ER -

CerebralWeb: A cytoscape.js plug-in to visualize networks stratified by subcellular localization

Abstract

ASJC Scopus subject areas

Access to Document

Other files and links

Cite this