INVEX - A web-based tool for integrative visualization of expression data

Jianguo Xia, Ngan H. Lyle, Matthew L. Mayer, Olga M. Pena, Robert E.W. Hancock, Michael Brudno

Research output: Contribution to journalArticlepeer-review

56 Citations (Scopus)

Abstract

Gene expression or metabolomics data generated from clinical settings are often associated with multiple metadata (i.e. diagnosis, genotype, gender, etc.). It is of great interest to analyze and to visualize the data in these contexts. Here, we introduce INVEX - a novel web-based tool that integrates the server-side capabilities for data analysis with the browse-based technology for data visualization. INVEX has two key features: (i) flexible differential expression analysis for a wide variety of experimental designs; and (ii) interactive visualization within the context of metadata and biological annotations. INVEX has built-in support for gene/metabolite annotation and a fully functional heatmap builder.

Original languageEnglish
Pages (from-to)3232-3234
Number of pages3
JournalBioinformatics
Volume29
Issue number24
DOIs
Publication statusPublished or Issued - 15 Dec 2013
Externally publishedYes

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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