PhyloBLAST: Facilitating phylogenetic analysis of BLAST results

Fiona S.L. Brinkman; Ivan Wan; Robert E.W. Hancock; Ann M. Rose; Steven J. Jones

doi:10.1093/bioinformatics/17.4.385

PhyloBLAST: Facilitating phylogenetic analysis of BLAST results

Fiona S.L. Brinkman
, Ivan Wan
, Robert E.W. Hancock
, Ann M. Rose
, Steven J. Jones

Research output: Contribution to journal › Article › peer-review

20 Citations (Scopus)

Abstract

PhyloBLAST is an internet-accessed application based on CGI/Perl programming that compares a users protein sequence to a SwissProt/TREMBL database using BLAST2 and then allows phylogenetic analyses to be performed on selected sequences from the BLAST output. Flexible features such as ability to input your own multiple sequence alignment and use PHYLIP program options provide additional web-based phylogenetic analysis functionality beyond the analysis of a BLAST result.

Original language	English
Pages (from-to)	385-387
Number of pages	3
Journal	Bioinformatics
Volume	17
Issue number	4
DOIs	https://doi.org/10.1093/bioinformatics/17.4.385
Publication status	Published or Issued - 2001
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/17.4.385

Cite this

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title = "PhyloBLAST: Facilitating phylogenetic analysis of BLAST results",

abstract = "PhyloBLAST is an internet-accessed application based on CGI/Perl programming that compares a users protein sequence to a SwissProt/TREMBL database using BLAST2 and then allows phylogenetic analyses to be performed on selected sequences from the BLAST output. Flexible features such as ability to input your own multiple sequence alignment and use PHYLIP program options provide additional web-based phylogenetic analysis functionality beyond the analysis of a BLAST result.",

author = "Brinkman, \{Fiona S.L.\} and Ivan Wan and Hancock, \{Robert E.W.\} and Rose, \{Ann M.\} and Jones, \{Steven J.\}",

note = "Funding Information: This application was developed for the Pathogenomics Project (http://www.pathogenomics.bc.ca/), which is funded by the Peter Wall Institute for Advanced Studies, Vancouver, Canada.",

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doi = "10.1093/bioinformatics/17.4.385",

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AU - Brinkman, Fiona S.L.

AU - Wan, Ivan

AU - Hancock, Robert E.W.

AU - Rose, Ann M.

AU - Jones, Steven J.

N1 - Funding Information: This application was developed for the Pathogenomics Project (http://www.pathogenomics.bc.ca/), which is funded by the Peter Wall Institute for Advanced Studies, Vancouver, Canada.

PY - 2001

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AB - PhyloBLAST is an internet-accessed application based on CGI/Perl programming that compares a users protein sequence to a SwissProt/TREMBL database using BLAST2 and then allows phylogenetic analyses to be performed on selected sequences from the BLAST output. Flexible features such as ability to input your own multiple sequence alignment and use PHYLIP program options provide additional web-based phylogenetic analysis functionality beyond the analysis of a BLAST result.

UR - https://www.scopus.com/pages/publications/0035022385

U2 - 10.1093/bioinformatics/17.4.385

DO - 10.1093/bioinformatics/17.4.385

M3 - Article

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JO - Bioinformatics

JF - Bioinformatics

IS - 4

ER -

PhyloBLAST: Facilitating phylogenetic analysis of BLAST results

Abstract

ASJC Scopus subject areas

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